docs: add paper citations, fix pedagogical issues, improve SKILL.md
- Cite arxiv 2602.23922 (Invariant-Driven Automated Testing) in all major docs - Add Progressive Complexity section to SKILL.md for LLM guidance - Fix SKILL.md Fast Start example to use deterministic ID generation - Fix getting-started.md failure output inconsistency - Fix auth-patterns.md TypeScript syntax in JS doc - Fix fastify-structure.md Date.now() in test helper - Fix observe.md misleading workspace heading - Build: clean | Tests: 849 pass, 0 fail
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This specification defines protocol-specific extensions for APOPHIS, driven by the Arbiter team's requirements for testing OAuth 2.1, WIMSE S2S, Transaction Tokens (RFC 8693), SPIFFE/SPIRE, and related security protocols.
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APOPHIS is grounded in [Invariant-Driven Automated Testing](https://arxiv.org/abs/2602.23922) (Malhado Ribeiro, 2021). Protocol extensions add domain-specific predicates (JWT, X.509, SPIFFE) to the core invariant framework.
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Arbiter maintains 58 protocol conformance test files covering 138 behaviors across 7 specifications. These extensions bridge the gap between declarative APOSTL contracts and the domain-specific predicates required for security protocol validation.
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### 1.1 Current Shipped vs Not-Shipped Snapshot
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