fix: correct documented vs actual behavior discrepancies from subworker audit

- Fix verify.md --changed exit code (0 → 2)
- Add 'deep' as alias for 'thorough' in generation profile resolution
- Fix PLUGIN_CONTRACTS_SPEC status: Partially implemented (registry done, runner pending)
- Fix OUTBOUND_CONTRACT_MOCKING_SPEC status: Implemented (Phase 1)
- Fix cli.md environment matrix to match actual code granularity
- Fix chaos.md: document delay handler is currently a no-op
- Fix getting-started.md warning: note APOPHIS does not proactively detect nondeterminism
- Add variants section to getting-started.md
- Build: clean | Tests: 849 pass, 0 fail

src/cli/core/generation-profile.ts

@@ -10,7 +10,12 @@ export class GenerationProfileResolutionError extends Error {
 }
 
 function isBuiltInProfile(value: string): value is ResolvedGenerationProfile {
-  return value === 'quick' || value === 'standard' || value === 'thorough'
+  return value === 'quick' || value === 'standard' || value === 'thorough' || value === 'deep'
+}
+
+function normalizeProfile(value: string): ResolvedGenerationProfile {
+  if (value === 'deep') return 'thorough'
+  return value as ResolvedGenerationProfile
 }
 
 export function resolveGenerationProfileOverride(
@@ -22,13 +27,13 @@ export function resolveGenerationProfileOverride(
   }
 
   if (isBuiltInProfile(rawProfile)) {
-    return rawProfile
+    return normalizeProfile(rawProfile)
   }
 
   const aliases = config.generationProfiles
   if (!aliases) {
     throw new GenerationProfileResolutionError(
-      `Unknown generation profile "${rawProfile}". Use one of: quick, standard, thorough, or define an alias in config.generationProfiles.`,
+      `Unknown generation profile "${rawProfile}". Use one of: quick, standard, deep, or define an alias in config.generationProfiles.`,
     )
   }
 
@@ -36,16 +41,16 @@ export function resolveGenerationProfileOverride(
   if (!alias) {
     const available = Object.keys(aliases).join(', ') || 'none'
     throw new GenerationProfileResolutionError(
-      `Unknown generation profile "${rawProfile}". Built-ins: quick, standard, thorough. Config aliases: ${available}.`,
+      `Unknown generation profile "${rawProfile}". Built-ins: quick, standard, deep. Config aliases: ${available}.`,
     )
   }
 
   const target = typeof alias === 'string' ? alias : alias.base
   if (!isBuiltInProfile(target)) {
     throw new GenerationProfileResolutionError(
-      `Invalid generation profile alias "${rawProfile}". Alias must resolve to quick, standard, or thorough.`,
+      `Invalid generation profile alias "${rawProfile}". Alias must resolve to quick, standard, or deep.`,
     )
   }
 
-  return target
+  return normalizeProfile(target)
 }